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Orthologs

These tables contain orthologs as Reciprocal Best Hits detected using soft filtering of low-information segments and a final Smith-Waterman alignment as described in:

Moreno-Hagelsieb G, Latimer K (2008) Choosing BLAST options for better detection of orthologs as reciprocal best hits. Bioinformatics 24(3): 319-324

The tables contain orthologs detected between Escherichia coli K12 MG1655 and other genomes in the RefSeq genome database. A better interface and tables for many other genomes will be posted here in the future

The columns in the tables are:

1. Query sequence id
2. Target sequence id
3. HSP number
4. Bit score
5. Raw blast score
6. E-value
7. Percent of query alignment
8. Percent of target alignment
9. Identities/alignment
10. Positives/alignment
11. Init and end of query in alignment
12. Init and end of target in alignment
13. Query sequence total length
14. Target sequence total length
15. Specify bi-directional, or fusion (LEFT|RIGHT) of the BDBH

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